V-1 isDuroy et al. -- Endogenous BSVs illuminate Musa balbisiana diversityBB

NJ tree built from eBSOLV genotypes with the 77 sampled Musa accessions. The With AR3A.association (3). This implied that HVR1 deletion could possibly also dissimilarity matrix input was estimated from PCR ID and Southern blot information (cf. Fig. 5). Black lines indicate groups of accessions with identical eBSOLV alleles: 1 and 2 are normal alleles present in PKW, 1* and 2* are slightly modified, although ** indicates wide divergences in sequence and structure in contrast to the PKW alleles which are no longer present. Colours of accessions are in line with Fig. 3. Only bootstrap values greater than 50 are displayed on the tree.V-1 isDuroy et al. -- Endogenous BSVs illuminate Musa balbisiana diversityBB 211 BB PK BB Batu BB PKW BB KT ABB Peli AAB KapeBSOLV-1 and -95 65 59 AAB Slen AAB Nang AAB Kuna OG NNM OG Vel OG Tex OG Man OG Orn OG Lat OG Coc OG Baj AA Pah AA mala AA LoTA AA IDN AA Bank AA Agu 0 68 AAB Luba BB LCK AAB PRB AAB MurAAB Lady AAB Yang2 BB 342 96 BB ButlA 69 BB 545 eBSOLV-1* ABB Daru ABB Saba 58 and/or -2* ABB Burro ABB Dole BB Hond ABB Bung 59BB Lal BB EK AAB Corn AAB Ori AAB KM BB 163 BB 63-80 BB 626 BB 852 AAB Gama ABB Beng eBSOLV-1 AAB ChuM ABB Auko AAB Aoa BB Mont BB But BB LBA BB 1016 AAB Ceyl BB Chi2 BB Chi1 BB Chi3 AAB Figue AAB Tay AB Eko eBSOLV-1* ABB Foug ABB Khom and/or -2* AAB Foco 60AAB Prata (novel allele) AAB PR 51 AB Kunn ABB Blue 54 62 AB Safet AAB Porp AAB Tig BB CameBSOLV**No eBSOLV0?FIG. 4. NJ tree built from eBSOLV genotypes with the 77 sampled Musa accessions. The dissimilarity matrix input was estimated from PCR ID and Southern blot data (cf. Fig. five). Black lines indicate groups of accessions with identical eBSOLV alleles: 1 and 2 are regular alleles present in PKW, 1* and 2* are slightly modified, although ** indicates wide divergences in sequence and structure in contrast to the PKW alleles that are no longer present. Colours of accessions are based on Fig. three. Only bootstrap values higher than 50 are displayed on the tree. Scale bar ?0? modifications per position.loss of eBSIMV. We also observed a pseudogenization for accessions within the Mai'a/ Popoulou group.eBSV-based analysis of M. balbisiana diversityAn eBSV dendrogram built around the weighted sum of dissimilarities was inferred from all eBSV information (Fig. 7). It appearsstructured by the presence/absence in the distinct eBSVs (Fig. 7), showing 4 principal groups as outlined by banana genotype and geographical origin. Interestingly, even if comparable SSR marker-based sub-groups are maintained 369158 (Fig. 3), the general structure shows ages between accessions such as these observed among BB and both ABB and AAB genotypes. The tree seems structured by the banana genotypes due to the fact all AAB hybrids had been present with few BB diploids in 1 aspect, and theDuroy et al. -- Endogenous BSVs illuminate Musa balbisiana diversityBB PK BB Batu BB EK AB Safet ABB Pell ABB Foug BB Chi3 BB Chi2 eBSGFV-7 and ABB Burro BB Hond BB 211 ABB Khom ABB Saba ABB Dole AB Eko BB 852 BB 545 1.46167E+14 ABB Daru BB LBA ABB Blue BB KT BB PKW BB ButlA AAB Foco eBSGFV-9 AAB Prata AAB PR BB Chi1 BB 342 eBSGFV-7* and -9* BB Mont AAB Tig 50 BB 626 BB 1016 BB 163 BB LCK eBSVGFV-9* AAB Bong AAB Moa AAB Gama 50 AAB Mur AAB PRB AAB ChuM BB 63-80 BB But ABB Beng AAB Kuna AAB Kap AAB Ori eBGFV-7 AAB KM AAB Corn ABB Auko AAB Dima ABB Bung BB Cam BB Lal eBSGFV** AAB Pop-96AAB Luba AAB Tay AAB Figue OG NNM OG Vel OG Tex OG Man OG Orn OG Lat OG Coc OG Baj AA Pah AA Maia AA LoTA AA IDN AA Bank AA Agu AAB Nang AAB Ceyl AAB Yang2 AAB Porp AB Kunn AAB Slen AAB LadyNo eBSGFV0?FIG.